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Title: | Analysis and characterization of the head kidney transcriptome from the Antarctic fish Trematomus bernacchii (Teleostea, Notothenioidea): a source for immune relevant genes | Authors: | Gerdol, Marco Buonocore, Francesco Scapigliati, Giuseppe Pallavicini, Alberto |
Journal: | MARINE GENOMICS | Issue Date: | 2015 | Abstract: | In this study we describe the de novo assembled head kidney transcriptome of the Antarctic notothenioid fish Trematomus bernacchii, an important model species for biochemical, environmental and immunological studies. RNA-seq data was generated using Illumina paired-end sequencing, obtaining ~7 Gbp of sequence data, which were assembled into 96,641 contigs and annotated with the Trinotate pipeline. Since this sequence collection is expected to contain a relevant number of immunity-related transcripts, it will be used as a reference for future immunological studies in this species. |
URI: | http://hdl.handle.net/2067/47776 | ISSN: | 1874-7787 | DOI: | 10.1016/j.margen.2014.12.005 | Rights: | Attribution-NonCommercial-NoDerivatives 4.0 International |
Appears in Collections: | A1. Articolo in rivista |
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File | Description | Size | Format | |
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224 Analysis and characterization of the head kidney transcriptome from the Antarctic fish Trematomus bernacchii.docx | Marine Genomics 2015 Accepted Version | 30.65 kB | Microsoft Word XML | View/Open |
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