ExpEdit: a webserver to explore human RNA editing in RNA-Seq experiments
Author(s)
Date Issued
2011
Type
article
Volume
27
Issue
9
Start Page
1311
End Page
1312
Journal
Abstract
ExpEdit is a web application for assessing RNA editing in human at known or user-specified sites supported by transcript data obtained by RNA-Seq experiments. Mapping data (in SAM/BAM format) or directly sequence reads [in FASTQ/short read archive (SRA) format] can be provided as input to carry out a comparative analysis against a large collection of known editing sites collected in DARNED database as well as other user-provided potentially edited positions. Results are shown as dynamic tables containing University of California, Santa Cruz (UCSC) links for a quick examination of the genomic context.